"# Simple example summary spreadsheet for tab2mage.pl script."																												
"# This file illustrates how to incorporate normalized data into the spreadsheet."																												
"# Lines starting with a '#' are treated as comments and are ignored."																												
																												
"Experiment section"																												
"domain"	"ebi.ac.uk"																											
"accession"	"E-EXML-7"																											
"quality_control"	"dye_swap_quality_control"																											
"experiment_design_type"	"strain_or_line_design;co-expression_design"																											
"name"	"Transcriptome analysis of invasive verses non-invasive strains of budding yeast "																											
"description"	"An experiment was performed to..."																											
"release_date"	"2004-08-30"																											
"submission_date"	"2004-07-28"																											
"submitter"	"John Falstaff"																											
"# The publication details below are fictitious"																												
"publication_title"	"Comparison of the transcriptomes of invasive verses non-invasive strains of budding yeast "																											
"authors"	"John Falstaff; Robin Goodfellow"																											
"journal"	"Nature Genetics"																											
"volume"	12																											
"issue"	4																											
"pages"	"123-456"																											
"year"	2004																											
"pubmed_id"	12345678																											
																												
"# Protocol text may be formatted using standard HTML tags"																												
"Protocol section"																												
"accession"	"text"	"name"																										
"P-EXML-1"	"Cells were grown in YPD (1% yeast extract/2% peptone/2% glucose) to an OD600 of approximately 0.8"	"Yeast growth"																										
"P-EXML-2"	"Your protocol text here"	"Yeast cell harvesting"																										
"P-EXML-3"	"Your protocol text here"	"Cell lysis and RNA prep"																										
"P-EXML-4"	"Your protocol text here"	"cDNA labeling"																										
"P-EXML-5"	"Your protocol text here"	"Hybridization"																										
"P-EXML-6"	"Your protocol text here"	"Scanning"																										
"P-EXML-7"	"Your protocol text here"	"Log Ratio Normalization"																										
"P-EXML-8"	"Your protocol text here"	"RMA normalization"																										
																												
"Hybridization section"																												
"File[raw]"	"File[normalized]"	"NormalizationType"	"Protocol[normalization]"	"Hybridization"	"Scan"	"Normalization"	"File[transformed]"	"TransformationType"	"Protocol[transformation]"	"Software[transformation]"	"Array[accession]"	"Array[serial]"	"Protocol[grow]"	"Protocol[treatment]"	"Protocol[extraction]"	"Protocol[labeling]"	"Protocol[hybridization]"	"Protocol[scanning]"	"BioSource"	"BioSourceMaterial"	"SampleMaterial"	"ExtractMaterial"	"LabeledExtractMaterial"	"Dye"	"FactorValue[StrainOrLine]"	"BioMaterialCharacteristics[Organism]"	"BioMaterialCharacteristics[StrainOrLine]"	"BioMaterialCharacteristics[Sex]"
"Data1.txt"	"NormData1.txt"	"log_ratio"	"P-EXML-7"	"Sigma1278b_1"	"Sigma1278b_1"	"Sigma1278b_1"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244532	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"S288C"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy5"	"S288C"	"Saccharomyces cerevisiae"	"S288C"	"mating_type_a"
"Data1.txt"	"NormData1.txt"	"log_ratio"	"P-EXML-7"	"Sigma1278b_1"	"Sigma1278b_1"	"Sigma1278b_1"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244532	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"Sigma1278b"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy3"	"Sigma1278b"	"Saccharomyces cerevisiae"	"Sigma1278b"	"mating_type_a"
"Data2.txt"	"NormData2.txt"	"log_ratio"	"P-EXML-7"	"Sigma1278b_2"	"Sigma1278b_2"	"Sigma1278b_2"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244533	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"S288C"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy3"	"S288C"	"Saccharomyces cerevisiae"	"S288C"	"mating_type_a"
"Data2.txt"	"NormData2.txt"	"log_ratio"	"P-EXML-7"	"Sigma1278b_2"	"Sigma1278b_2"	"Sigma1278b_2"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244533	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"Sigma1278b"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy5"	"Sigma1278b"	"Saccharomyces cerevisiae"	"Sigma1278b"	"mating_type_a"
"Data3.txt"	"NormData3.txt"	"log_ratio"	"P-EXML-7"	"W303a_1"	"W303a_1"	"W303a_1"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244532	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"S288C"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy5"	"S288C"	"Saccharomyces cerevisiae"	"S288C"	"mating_type_a"
"Data3.txt"	"NormData3.txt"	"log_ratio"	"P-EXML-7"	"W303a_1"	"W303a_1"	"W303a_1"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244532	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"W303a"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy3"	"W303a"	"Saccharomyces cerevisiae"	"W303a"	"mating_type_a"
"Data4.txt"	"NormData4.txt"	"log_ratio"	"P-EXML-7"	"W303a_2"	"W303a_2"	"W303a_2"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244533	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"S288C"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy3"	"S288C"	"Saccharomyces cerevisiae"	"S288C"	"mating_type_a"
"Data4.txt"	"NormData4.txt"	"log_ratio"	"P-EXML-7"	"W303a_2"	"W303a_2"	"W303a_2"	"FGEM.txt"	"RMA"	"P-EXML-8"	"BioConductor(1.6)"	"A-EXML-1"	244533	"P-EXML-1"	"P-EXML-2"	"P-EXML-3"	"P-EXML-4"	"P-EXML-5"	"P-EXML-6"	"W303a"	"whole_organism"	"whole_organism"	"total_RNA"	"synthetic_DNA"	"Cy5"	"W303a"	"Saccharomyces cerevisiae"	"W303a"	"mating_type_a"