# Simple example summary spreadsheet for tab2mage.pl script. # This file illustrates how pooling of samples into a reference channel may be accomplished. # Lines starting with a '#' are treated as comments and are ignored. Experiment section domain ebi.ac.uk accession E-EXML-5 quality_control dye_swap_quality_control experiment_design_type strain_or_line_design name Transcriptome analysis of invasive verses non-invasive strains of budding yeast description An experiment was performed to... release_date 2004-08-30 submission_date 2004-07-28 submitter John Falstaff # The publication details below are fictitious publication_title Comparison of the transcriptomes of invasive verses non-invasive strains of budding yeast authors John Falstaff; Robin Goodfellow journal Nature Genetics volume 12 issue 4 pages 123-456 year 2004 # Protocol text may be formatted using standard HTML tags Protocol section accession text name P-EXML-1 Cells were grown in YPD (1% yeast extract/2% peptone/2% glucose) to an OD600 of approximately 0.8 Yeast growth P-EXML-2 Your protocol text here Yeast cell harvesting P-EXML-3 Your protocol text here Cell lysis and RNA prep P-EXML-4 Your protocol text here cDNA labeling P-EXML-5 Your protocol text here Hybridization P-EXML-6 Your protocol text here Scanning P-EXML-7 Your protocol text here Extract pooling Hybridization section BioMaterialCharacteristics[Organism] BioMaterialCharacteristics[StrainOrLine] BioMaterialCharacteristics[Sex] BioSource BioSourceMaterial SampleMaterial ExtractMaterial Extract LabeledExtractMaterial Dye Protocol[grow] Protocol[treatment] Protocol[extraction] Protocol[pool] Protocol[labeling] Protocol[hybridization] Protocol[scanning] FactorValue[Time(h)] File[raw] Array[accession] Array[serial] Saccharomyces cerevisiae S288C mating_type_a Time1 whole_organism whole_organism total_RNA Time1 synthetic_DNA Cy3 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-4 P-EXML-5 P-EXML-6 1 Data1.txt A-EXML-1 244531 Saccharomyces cerevisiae S288C mating_type_a Time1 whole_organism whole_organism total_RNA Reference extract synthetic_DNA Cy5 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-7 P-EXML-4 P-EXML-5 P-EXML-6 Data1.txt A-EXML-1 244531 Saccharomyces cerevisiae S288C mating_type_a Time2 whole_organism whole_organism total_RNA Time2 synthetic_DNA Cy3 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-4 P-EXML-5 P-EXML-6 2 Data2.txt A-EXML-1 244532 Saccharomyces cerevisiae S288C mating_type_a Time2 whole_organism whole_organism total_RNA Reference extract synthetic_DNA Cy5 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-7 P-EXML-4 P-EXML-5 P-EXML-6 Data2.txt A-EXML-1 244532 Saccharomyces cerevisiae S288C mating_type_a Time3 whole_organism whole_organism total_RNA Time3 synthetic_DNA Cy3 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-4 P-EXML-5 P-EXML-6 3 Data3.txt A-EXML-1 244533 Saccharomyces cerevisiae S288C mating_type_a Time3 whole_organism whole_organism total_RNA Reference extract synthetic_DNA Cy5 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-7 P-EXML-4 P-EXML-5 P-EXML-6 Data3.txt A-EXML-1 244533