Experiment section domain ebi.ac.uk accession E-TABM-70 quality_control dye_swap_quality_control experiment_design_type compound_treatment_design name IGR_PLOIDY_STUDY_GK description "During the oncogenic process, tetraploidy is a candidate intermediate stage leading from diploidy to aneuploidy. The aim of our experiment was to establish tetraploid clones and to characterize their transcriptome." release_date 2006-01-23 submission_date 2005-12-19 submitter Philippe Dessen submitter_email dessen@igr.fr publication_title Apoptosis regulation in tetraploid cells authors Maria Castedo; Arud Coquelle; Sonia Vivet; Audrey Kauffmann; Marie O. Pequignot; Noelia Casares; Alexander Valent; Shahul Mouhamad; Elise Schmitt; Nazanine Modjtahedi; William Vainchenker; Laurence Zitvogel; Vladimir Lazar; Carmen Garrido; Guido Kroemer address "Centre Natiol de la Recherche Scientifique, UMR8125,Ę; UnitŽ de GŽnomique Fonctionnelle, Institut Gustave Roussy, 39 rue Camille-Desmoulins, F-94805 Villejuif, France; INSERM U-517, Faculty of Medicine and Pharmacy, 7 Boulevard Jeanne d;Arc, 21033 Dijon, FranceĘ; INSERM U362,Institut Gustave Roussy, 39 rue Camille-Desmoulins, F-94805 Villejuif, France; UnitŽ dŐImmunologie, ERM0208 INSERM, IFR54, Institut Gustave Roussy, Villejuif, France" journal EMBO J volume revision issue pages year 2006 Protocol section accession type text parameters P_IGR_SAMPLE_04_TETRA_1 compound_based_treatment "RKO cells were grown in McCoy' 5A medium supplemented with 10%FCS. In order to generate tetraploid and diploid clones, the cell line RKO containing ~5% tetraploid cells was subcloned by limiting dilution into diploid and tetraploid clones. One diploid clone was transfected with a cDNA encoding H2B-GFP, selected in blasticidine (20 µg/ml), FACS-separated into subsets of cells enriched in a diploid or tetraploid DNA content to generate diplo•d and tetraploid H2B-GFP-expressing clones. " P_IGR_SAMPLE_04_TETRA_2 compound_based_treatment "Tetraploid HCT116 clones were generated upon treatment with cytochalasin D (0.6 µg/ml, 48h) or nocodazole (100nM, 48h). For microarray assay, established diploid and tetraploid clones were collected during exponential growth with a cell scrapper in 1ml RLT lysis buffer with beta-mercaptoethanol (10ml/ml)." P_IGR_EXTRACT_04 nucleic_acid_extraction "Total RNA was isolated from using Rneasy micro elute kit (Qiagen, Courtaboeuf, France) according to manufacturer instructions. Briefly Cells was mixed with 350 ul RLT buffer with Beta Mercaptoethanol 1%. Then add 350 ul ethanol 70% and mixed thoroughly by" P_IGR_POOL_04A pool "Pools of RNA (Pool1 or Pool2), obtained by mixing equal amounts (500 ng) of total RNA from each of the 8 cell line samples, constituted the reference in each group. " P_IGR_POOL_04B pool "Pools of RNA (Pool1 or Pool2), obtained by mixing equal amounts (500 ng) of total RNA from each of the 8 cell line samples, constituted the reference in each group. " P_IGR_LABEL_CY3_04 labeling "(500 ng, Amplification=RNA polymerases). Agilent oligo Cy5 or Cy3 probes labeling protocol. Kit used for probe labeling: Agilent Fluorescent Low input Linear Amplification kit (G2554A) adapted for small amount of total RNA (500 ng total RNA per reaction)." P_IGR_LABEL_CY5_04 labeling "(500 ng, Amplification=RNA polymerases). Agilent oligo Cy5 or Cy3 probes labeling protocol. Kit used for probe labeling: Agilent Fluorescent Low input Linear Amplification kit (G2554A) adapted for small amount of total RNA (500 ng total RNA per reaction)." P_IGR_HYBRID_04 hybridization Agilent Hybridization Protocol (Chamber type: Agilent SureHyb Chamber; Quantity of labelled extract: 1 ug; duration: 17 hours; volume: 650 ul ; Temperature in °C: 60). Add the following components in clean 1.5 ml tubes. 1 ug linearly amplified cRNA la P_IGR_SCANNING_04 image_acquisition "Scanning was performed with a Agilent 2565 AA DNA Microarray scanner using defaults parameters (100ˇ PMT, 10 um resolution, at 20ˇC in low ozone concentration environment. Microarray images were alysed by using Feature Extraction software version A.7.5.1 from Agilent technologies. Defaults settings were used." P_IGR_TRANSFORM_04 Transformation protocol "Raw data files from the Agilent Feature Extraction software A.6.1.1 for image alysis were then imported into Resolver(TM) system for gene expression data alysis from Rosetta Inpharmatics. Then combined experiments were generated, to obtain average values from the replicates and dye swap experiments in order to avoid dye incorporation bias. Microarray data were processed and combined using the Rosetta Resolver system described in Stoughton and Dai (2002)." Hybridization section File[raw] Array[accession] Array[serial] Protocol[treatment] Protocol[extraction] Protocol[pool] Protocol[labeling] Protocol[hybridization] Protocol[scanning] Protocol[transformation] BioSource Sample Extract LabeledExtract Dye Hybridization File[transformed] TransformationType BioSourceMaterial ExtractMaterial LabeledExtractMaterial FactorValue[CellLine] FactorValue[ploidy] BioMaterialCharacteristics[Organism] BioMaterialCharacteristics[Provider] BioMaterialCharacteristics[CellLine] BioMaterialCharacteristics[Treatment] BioMaterialCharacteristics[Ploidy] US14702370_251239119523_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DW DW sample DW extract DW Cy5 Cy5 DW Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119523_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 DW Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119541_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DW DW sample DW extract DW Cy3 Cy3 DW Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119541_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 DW Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119609_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DX DX sample DX extract DX Cy5 Cy5 DX Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119609_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 DX Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119524_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DX DX sample DX extract DX Cy3 Cy3 DX Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119524_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 DX Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119530_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DY DY sample DY extract DY Cy5 Cy5 DY Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119530_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 DY Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119525_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DY DY sample DY extract DY Cy3 Cy3 DY Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119525_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 DY Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119531_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DZ DZ sample DZ extract DZ Cy5 Cy5 DZ Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119531_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 DZ Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119614_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 DZ DZ sample DZ extract DZ Cy3 Cy3 DZ Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as diploid diploid US14702370_251239119614_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 DZ Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119519_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TA TA sample TA extract TA Cy5 Cy5 TA Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119519_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 TA Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119487_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TA TA sample TA extract TA Cy3 Cy3 TA Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119487_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 TA Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119520_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TB TB sample TB extract TB Cy5 Cy5 TB Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119520_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 TB Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119489_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TB TB sample TB extract TB Cy3 Cy3 TB Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119489_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 TB Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119608_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TC TC sample TC extract TC Cy5 Cy5 TC Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119608_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 TC Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119538_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TC TC sample TC extract TC Cy3 Cy3 TC Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119538_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 TC Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119522_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TD TD sample TD extract TD Cy5 Cy5 TD Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119522_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy3 Cy3 TD Cy5_Pool1 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239119540_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 TD TD sample TD extract TD Cy3 Cy3 TD Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO clone selection as tetraploid tetraploid US14702370_251239119540_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_1 P_IGR_EXTRACT_04 P_IGR_POOL_04A P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool1 Pool1 sample Pool1 extract Pool1 Cy5 Cy5 TD Cy3_Pool1 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA colon RKO Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" colon RKO US14702370_251239124865_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co3 Co3 sample Co3 extract Co3 Cy5 Cy5 Co3 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124865_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 Co3 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124928_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co3 Co3 sample Co3 extract Co3 Cy3 Cy3 Co3 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124928_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 Co3 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124866_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co4 Co4 sample Co4 extract Co4 Cy5 Cy5 Co4 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124866_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 Co4 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124929_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co4 Co4 sample Co4 extract Co4 Cy3 Cy3 Co4 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124929_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 Co4 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124869_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co1 Co1 sample Co1 extract Co1 Cy5 Cy5 Co1 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124869_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 Co1 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124932_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co1 Co1 sample Co1 extract Co1 Cy3 Cy3 Co1 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124932_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 Co1 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124925_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co2 Co2 sample Co2 extract Co2 Cy5 Cy5 Co2 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124925_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 Co2 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124933_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Co2 Co2 sample Co2 extract Co2 Cy3 Cy3 Co2 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 diploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 diploid US14702370_251239124933_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 Co2 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124926_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 C1 C1 sample C1 extract C1 Cy5 Cy5 C1 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 cytochalasin D tetraploid US14702370_251239124926_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 C1 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124934_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 C1 C1 sample C1 extract C1 Cy3 Cy3 C1 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 cytochalasin D tetraploid US14702370_251239124934_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 C1 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124927_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 C2 C2 sample C2 extract C2 Cy5 Cy5 C2 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 cytochalasin D tetraploid US14702370_251239124927_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 C2 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124940_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 C2 C2 sample C2 extract C2 Cy3 Cy3 C2 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 cytochalasin D tetraploid US14702370_251239124940_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 C2 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124867_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 N1 N1 sample N1 extract N1 Cy5 Cy5 N1 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 nocodazole tetraploid US14702370_251239124867_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 N1 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124930_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 N1 N1 sample N1 extract N1 Cy3 Cy3 N1 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 nocodazole tetraploid US14702370_251239124930_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 N1 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124868_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 N2 N2 sample N2 extract N2 Cy5 Cy5 N2 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 nocodazole tetraploid US14702370_251239124868_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY5_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy5 Cy5 N2 Cy5-Pool2 Cy5 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 US14702370_251239124931_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 N2 N2 sample N2 extract N2 Cy3 Cy3 N2 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 tetraploid Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116 nocodazole tetraploid US14702370_251239124931_S01_A01.txt A-MEXP-304 2.51E+11 P_IGR_SAMPLE_04_TETRA_2 P_IGR_EXTRACT_04 P_IGR_POOL_04B P_IGR_LABEL_CY3_04 P_IGR_HYBRID_04 P_IGR_SCANNING_04 P_IGR_TRANSFORM_04 Pool2 Pool2 sample Pool2 extract Pool2 Cy3 Cy3 N2 Cy3-Pool2 Cy3 hyb igr_ploidy_gk_all_seqs_all_exps_hp.txt lowess cell line total_RNA synthetic_RNA HCT116 Homo sapiens "CNRS-UMR8125, Institut Gustave Roussy, 94805 Villejuif, France" HCT116