"Source Name" "Material Type" "Characteristics [BioSourceProvider]" "Characteristics [BioSourceType]" "Characteristics [CellLine]" "Characteristics [ClinicalHistory]" "Characteristics [DevelopmentalStage]" "Characteristics [DiseaseState]" "Characteristics [Individual]" "Characteristics [OrganismPart]" "Characteristics [Organism]" "Characteristics [Sex]" "Characteristics [TargetedCellType]" "Protocol REF" "Sample Name" "Material Type" "Protocol REF" "Sample Name" "Material Type" "Extract Name" "Material Type" "Protocol REF" "Labeled Extract Name" "Material Type" Label "Protocol REF" "Hybridization Name" "Array Design REF" "Protocol REF" "Scan Name" "Array Data File" "Protocol REF" "Normalization Name" "Comment[Normalization Type]" "Derived Array Data Matrix File" "Factor Value [CELLLINE]" "Factor Value [DISEASESTATE]" "Factor Value [MATERIALTYPE]" 1139T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 1139 "Lymph node metastasis" adult "Lymph node metastasis" 1139 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 1139T organism_part BF-MeCIP E_1139T genomic_DNA "L_1139T IP" molecular_mixture MeCIP_Cy3 "L_1139T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_1139T_1139T_1 A-MEXP-568 BF_CGI_Scan 1139T 1139T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 1139 "Lymph node metastasis" molecular_mixture 1139T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 1139 "Lymph node metastasis" adult "Lymph node metastasis" 1139 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 1139T organism_part BF-MeCIP E_1139T genomic_DNA "L_1139T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_1139T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_1139T_1139T_1 A-MEXP-568 BF_CGI_Scan 1139T 1139T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 1139 "Lymph node metastasis" genomic_DNA 120T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 120 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 120 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 120T organism_part BF-MeCIP E_120T genomic_DNA "L_120T IP" molecular_mixture MeCIP_Cy3 "L_120T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_120T_120T_1 A-MEXP-568 BF_CGI_Scan 120T 120T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 120 "Infiltrating ductal carcinoma" molecular_mixture 120T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 120 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 120 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 120T organism_part BF-MeCIP E_120T genomic_DNA "L_120 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_120T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_120T_120T_1 A-MEXP-568 BF_CGI_Scan 120T 120T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 120 "Infiltrating ductal carcinoma" genomic_DNA 2845T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 2845 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 2845 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 2845T organism_part BF-MeCIP E_2845T genomic_DNA "L_2845T IP" molecular_mixture MeCIP_Cy3 "L_2845T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_2845T_2845T_1 A-MEXP-568 BF_CGI_Scan 2845T 2845T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 2845 "Infiltrating ductal carcinoma" molecular_mixture 2845T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 2845 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 2845 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 2845T organism_part BF-MeCIP E_2845T genomic_DNA "L_2845T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_2845T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_2845T_2845T_1 A-MEXP-568 BF_CGI_Scan 2845T 2845T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 2845 "Infiltrating ductal carcinoma" genomic_DNA 5256T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 5256 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 5256 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 5256T organism_part BF-MeCIP E_5256 genomic_DNA "L_5256T IP" molecular_mixture MeCIP_Cy3 "L_5256T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_5256T_5256T_1 A-MEXP-568 BF_CGI_Scan 5256T 5256T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 5256 "Infiltrating ductal carcinoma" molecular_mixture 5256T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 5256 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 5256 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 5256T organism_part BF-MeCIP E_5256 genomic_DNA "L_5256T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_5256T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_5256T_5256T_1 A-MEXP-568 BF_CGI_Scan 5256T 5256T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 5256 "Infiltrating ductal carcinoma" genomic_DNA 5343N whole_organism "University Medical Center, Tucson,AZ" frozen_sample 5343 adult Normal 5343 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 5343N organism_part BF-MeCIP E_5343N genomic_DNA "L_5343N IP" molecular_mixture MeCIP_Cy3 "L_5343N Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_5343N_5343N_1 A-MEXP-568 BF_CGI_Scan 5343N 5343N.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 5343 normal molecular_mixture 5343N whole_organism "University Medical Center, Tucson,AZ" frozen_sample 5343 adult Normal 5343 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 5343N organism_part BF-MeCIP E_5343N genomic_DNA "L_5343N sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_5343N_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_5343N_5343N_1 A-MEXP-568 BF_CGI_Scan 5343N 5343N.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 5343 normal genomic_DNA 5799T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 5799 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 5799 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 5799T organism_part BF-MeCIP E_5799T genomic_DNA "L_5799T IP" molecular_mixture MeCIP_Cy3 "L_5799T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_5799T_5799T_1 A-MEXP-568 BF_CGI_Scan 5799T 5799T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 5799 "Infiltrating ductal carcinoma" molecular_mixture 5799T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 5799 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 5799 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 5799T organism_part BF-MeCIP E_5799T genomic_DNA "L_5799T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_5799T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_5799T_5799T_1 A-MEXP-568 BF_CGI_Scan 5799T 5799T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 5799 "Infiltrating ductal carcinoma" genomic_DNA 6245T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 6245 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 6245 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 6245T organism_part BF-MeCIP E_6245T genomic_DNA "L_6245T IP" molecular_mixture MeCIP_Cy3 "L_6245T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_6245T_6245T_1 A-MEXP-568 BF_CGI_Scan 6245T 6245T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 6245 "Infiltrating ductal carcinoma" molecular_mixture 6245T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 6245 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 6245 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 6245T organism_part BF-MeCIP E_6245T genomic_DNA "L_6245T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_6245T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_6245T_6245T_1 A-MEXP-568 BF_CGI_Scan 6245T 6245T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 6245 "Infiltrating ductal carcinoma" genomic_DNA 6333N whole_organism "University Medical Center, Tucson,AZ" frozen_sample 6333 adult Normal 6333 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 6333N organism_part BF-MeCIP E_6333N genomic_DNA "L_6333N IP" molecular_mixture MeCIP_Cy3 "L_6333N Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_6333N_6333N_1 A-MEXP-568 BF_CGI_Scan 6333N 6333N.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 6333 normal molecular_mixture 6333N whole_organism "University Medical Center, Tucson,AZ" frozen_sample 6333 adult Normal 6333 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 6333N organism_part BF-MeCIP E_6333N genomic_DNA "L_6333N sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_6333N_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_6333N_6333N_1 A-MEXP-568 BF_CGI_Scan 6333N 6333N.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 6333 normal genomic_DNA 7732N whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7732 adult Normal 7732 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7732N organism_part BF-MeCIP E_7732N genomic_DNA "L_7732N IP" molecular_mixture MeCIP_Cy3 "L_7732N Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_7732N_7732N_1 A-MEXP-568 BF_CGI_Scan 7732N 7732N.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7732 normal molecular_mixture 7732N whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7732 adult Normal 7732 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7732N organism_part BF-MeCIP E_7732N genomic_DNA "L_7732N sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_7732N_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_7732N_7732N_1 A-MEXP-568 BF_CGI_Scan 7732N 7732N.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7732 normal genomic_DNA 7732T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7732 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 7732 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7732T organism_part BF-MeCIP E_7732T genomic_DNA "L_7732T IP" molecular_mixture MeCIP_Cy3 "L_7732T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_7732T_7732T_1 A-MEXP-568 BF_CGI_Scan 7732T 7732T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7732 "Infiltrating ductal carcinoma" molecular_mixture 7732T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7732 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 7732 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7732T organism_part BF-MeCIP E_7732T genomic_DNA "L_7732T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_7732T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_7732T_7732T_1 A-MEXP-568 BF_CGI_Scan 7732T 7732T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7732 "Infiltrating ductal carcinoma" genomic_DNA 7768T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7768 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 7768 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7768T organism_part BF-MeCIP E_7768T genomic_DNA "L_7768T IP" molecular_mixture MeCIP_Cy3 "L_7768T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_7768T_7768T_1 A-MEXP-568 BF_CGI_Scan 7768T 7768T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7768 "Infiltrating ductal carcinoma" molecular_mixture 7768T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7768 "Infiltrating ductal carcinoma" adult "Infiltrating ductal carcinoma" 7768 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7768T organism_part BF-MeCIP E_7768T genomic_DNA "L_7768T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_7768T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_7768T_7768T_1 A-MEXP-568 BF_CGI_Scan 7768T 7768T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7768 "Infiltrating ductal carcinoma" genomic_DNA 7788T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7788 "Infiltrating lobular carcinoma" adult "Infiltrating lobular carcinoma" 7788 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7788T organism_part BF-MeCIP E_7788T genomic_DNA "L_7788T IP" molecular_mixture MeCIP_Cy3 "L_7788T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_7788T_7788T_1 A-MEXP-568 BF_CGI_Scan 7788T 7788T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7788 "Infiltrating lobular carcinoma" molecular_mixture 7788T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 7788 "Infiltrating lobular carcinoma" adult "Infiltrating lobular carcinoma" 7788 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 7788T organism_part BF-MeCIP E_7788T genomic_DNA "L_7788T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_7788T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_7788T_7788T_1 A-MEXP-568 BF_CGI_Scan 7788T 7788T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 7788 "Infiltrating lobular carcinoma" genomic_DNA 9663T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 9663 "Lymph node metastasis" adult "Lymph node metastasis" 9663 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 9663T organism_part BF-MeCIP E_9663T genomic_DNA "L_9663T IP" molecular_mixture MeCIP_Cy3 "L_9663T Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_9663T_9663T_1 A-MEXP-568 BF_CGI_Scan 9663T 9663T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 9663 "Lymph node metastasis" molecular_mixture 9663T whole_organism "University Medical Center, Tucson,AZ" frozen_sample 9663 "Lymph node metastasis" adult "Lymph node metastasis" 9663 "mammary gland" "Homo sapiens" female Epithelial BREAST_TISSUE 9663T organism_part BF-MeCIP E_9663T genomic_DNA "L_9663T sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_9663T_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_9663T_9663T_1 A-MEXP-568 BF_CGI_Scan 9663T 9663T.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt 9663 "Lymph node metastasis" genomic_DNA "BT 549-1" whole_organism "American Type Culture Collection (Rockville, MD)" "BT 549" "Breast Cancer Cell line" adult "Breast Cancer Cell line" "BT 549" "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 "BT 549-1" organism_part BF-MeCIP "E_BT 549-1" genomic_DNA "L_BT 549-1 IP" molecular_mixture MeCIP_Cy3 "L_BT 549-1 Cy3" synthetic_DNA Cy3 BF_CGI_hyb "H_BT 549-1_BT 549-1_1" A-MEXP-568 BF_CGI_Scan BT549-1 BT549-1.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt "BT 549" "Breast Cancer Cell line" molecular_mixture "BT 549-1" whole_organism "American Type Culture Collection (Rockville, MD)" "BT 549" "Breast Cancer Cell line" adult "Breast Cancer Cell line" "BT 549" "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 "BT 549-1" organism_part BF-MeCIP "E_BT 549-1" genomic_DNA "L_BT 549-1 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_BT 549-1_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb "H_BT 549-1_BT 549-1_1" A-MEXP-568 BF_CGI_Scan BT549-1 BT549-1.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt "BT 549" "Breast Cancer Cell line" genomic_DNA "BT 549-2" whole_organism "American Type Culture Collection (Rockville, MD)" "BT 549" "Breast Cancer Cell line" adult "Breast Cancer Cell line" "BT 549" "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 "BT 549-2" organism_part BF-MeCIP "E_BT 549-2" genomic_DNA "L_BT 549-2 IP" molecular_mixture MeCIP_Cy3 "L_BT 549-2 Cy3" synthetic_DNA Cy3 BF_CGI_hyb "H_BT 549-2_BT 549-2_1" A-MEXP-568 BF_CGI_Scan BT549-2 BT549-2.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt "BT 549" "Breast Cancer Cell line" molecular_mixture "BT 549-2" whole_organism "American Type Culture Collection (Rockville, MD)" "BT 549" "Breast Cancer Cell line" adult "Breast Cancer Cell line" "BT 549" "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 "BT 549-2" organism_part BF-MeCIP "E_BT 549-2" genomic_DNA "L_BT 549-2 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_BT 549-2_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb "H_BT 549-2_BT 549-2_1" A-MEXP-568 BF_CGI_Scan BT549-2 BT549-2.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt "BT 549" "Breast Cancer Cell line" genomic_DNA HMEC1 whole_organism "Clonetics, San Diego, CA" HMEC "Human Mammary Epithelial Cell" adult Normal HMEC "mammary gland" "Homo sapiens" female Epithelial HMEC HMEC1 organism_part BF-MeCIP E_HMEC1 genomic_DNA "L_HMEC1 IP" molecular_mixture MeCIP_Cy3 "L_HMEC1 Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_HMEC1_HMEC1_1 A-MEXP-568 BF_CGI_Scan HMEC1 HMEC1.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt HMEC normal molecular_mixture HMEC1 whole_organism "Clonetics, San Diego, CA" HMEC "Human Mammary Epithelial Cell" adult Normal HMEC "mammary gland" "Homo sapiens" female Epithelial HMEC HMEC1 organism_part BF-MeCIP E_HMEC1 genomic_DNA "L_HMEC1 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_HMEC1_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_HMEC1_HMEC1_1 A-MEXP-568 BF_CGI_Scan HMEC1 HMEC1.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt HMEC normal genomic_DNA HMEC2 whole_organism "Clonetics, San Diego, CA" HMEC "Human Mammary Epithelial Cell" adult Normal HMEC "mammary gland" "Homo sapiens" female Epithelial HMEC HMEC2 organism_part BF-MeCIP E_HMEC2 genomic_DNA "L_HMEC2 IP" molecular_mixture MeCIP_Cy3 "L_HMEC2 Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_HMEC2_HMEC2_1 A-MEXP-568 BF_CGI_Scan HMEC2 HMEC2.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt HMEC normal molecular_mixture HMEC2 whole_organism "Clonetics, San Diego, CA" HMEC "Human Mammary Epithelial Cell" adult Normal HMEC "mammary gland" "Homo sapiens" female Epithelial HMEC HMEC2 organism_part BF-MeCIP E_HMEC2 genomic_DNA "L_HMEC2 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_HMEC2_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_HMEC2_HMEC2_1 A-MEXP-568 BF_CGI_Scan HMEC2 HMEC2.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt HMEC normal genomic_DNA HMEC3 whole_organism "Clonetics, San Diego, CA" HMEC "Human Mammary Epithelial Cell" adult Normal HMEC "mammary gland" "Homo sapiens" female Epithelial HMEC HMEC3 organism_part BF-MeCIP E_HMEC3 genomic_DNA "L_HMEC3 IP" molecular_mixture MeCIP_Cy3 "L_HMEC3 Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_HMEC3_HMEC3_1 A-MEXP-568 BF_CGI_Scan HMEC3 HMEC3.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt HMEC normal molecular_mixture HMEC3 whole_organism "Clonetics, San Diego, CA" HMEC "Human Mammary Epithelial Cell" adult Normal HMEC "mammary gland" "Homo sapiens" female Epithelial HMEC HMEC3 organism_part BF-MeCIP E_HMEC3 genomic_DNA "L_HMEC3 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_HMEC3_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_HMEC3_HMEC3_1 A-MEXP-568 BF_CGI_Scan HMEC3 HMEC3.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt HMEC normal genomic_DNA MB-MDA-231-1 whole_organism "American Type Culture Collection (Rockville, MD)" MB-MDA-231 "Breast Cancer Cell line" adult "Breast Cancer Cell line" MB-MDA-231 "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 MB-MDA-231-1 organism_part BF-MeCIP E_MB-MDA-231-1 genomic_DNA "L_MB-MDA-231-1 IP" molecular_mixture MeCIP_Cy3 "L_MB-MDA-231-1 Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_MB-MDA-231-1_MB-MDA-231-1_1 A-MEXP-568 BF_CGI_Scan MDA-MB-231-1 MDA-MB-231-1.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt MB-MDA-231 "Breast Cancer Cell line" molecular_mixture MB-MDA-231-1 whole_organism "American Type Culture Collection (Rockville, MD)" MB-MDA-231 "Breast Cancer Cell line" adult "Breast Cancer Cell line" MB-MDA-231 "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 MB-MDA-231-1 organism_part BF-MeCIP E_MB-MDA-231-1 genomic_DNA "L_MB-MDA-231-1 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_MB-MDA-231-1_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_MB-MDA-231-1_MB-MDA-231-1_1 A-MEXP-568 BF_CGI_Scan MDA-MB-231-1 MDA-MB-231-1.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt MB-MDA-231 "Breast Cancer Cell line" genomic_DNA MB-MDA-231-2 whole_organism "American Type Culture Collection (Rockville, MD)" MB-MDA-231 "Breast Cancer Cell line" adult "Breast Cancer Cell line" MB-MDA-231 "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 MB-MDA-231-2 organism_part BF-MeCIP E_MB-MDA-231-2 genomic_DNA "L_MB-MDA-231-2 IP" molecular_mixture MeCIP_Cy3 "L_MB-MDA-231-2 Cy3" synthetic_DNA Cy3 BF_CGI_hyb H_MB-MDA-231-2_MB-MDA-231-2_1 A-MEXP-568 BF_CGI_Scan MDA-MB-231-2 MDA-MB-231-2.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt MB-MDA-231 "Breast Cancer Cell line" molecular_mixture MB-MDA-231-2 whole_organism "American Type Culture Collection (Rockville, MD)" MB-MDA-231 "Breast Cancer Cell line" adult "Breast Cancer Cell line" MB-MDA-231 "mammary gland" "Homo sapiens" female Epithelial CCL-231-BT549 MB-MDA-231-2 organism_part BF-MeCIP E_MB-MDA-231-2 genomic_DNA "L_MB-MDA-231-2 sonicated input DNA" genomic_DNA MeCIP_Cy5 "L_MB-MDA-231-2_1 Cy5" synthetic_DNA Cy5 BF_CGI_hyb H_MB-MDA-231-2_MB-MDA-231-2_1 A-MEXP-568 BF_CGI_Scan MDA-MB-231-2 MDA-MB-231-2.gpr BF-HOXA_transf combined_data_HOXA.txt combined_data_HOXA.txt MB-MDA-231 "Breast Cancer Cell line" genomic_DNA