# Simple example summary spreadsheet for tab2mage.pl script. # This file gives an example of a ChIP chip experiment. # Lines starting with a '#' are treated as comments and are ignored. Experiment section domain ebi.ac.uk accession E-EXML-3 experiment_design_type strain_or_line_design;binding_site_identification_design name RTG3 and CAD1 description An experiment was performed to... release_date 2004-08-30 submission_date 2004-07-28 submitter John Falstaff # The publication details below are fictitious publication_title Chromatin IP using myc-tagged RTG3 and CAD1 strains of Saccharomyces cerevisiae authors John Falstaff journal Nature Genetics volume 12 issue 4 pages 123-456 year 2004 # Protocol text may be formatted using standard HTML tags Protocol section accession text name P-EXML-1 Cells were grown in YPD (1% yeast extract/2% peptone/2% glucose) to an OD600 of approximately 0.8 Yeast growth P-EXML-2 Your protocol text here Yeast cell harvesting P-EXML-3 Your protocol text here Cell lysis and RNA prep P-EXML-4 Your protocol text here cDNA labeling P-EXML-5 Your protocol text here Hybridization P-EXML-6 Your protocol text here Scanning P-EXML-7 Your protocol text here Chromatin immunoprecipitation Hybridization section File[raw] Array[accession] Array[serial] Protocol[grow] Protocol[treatment] Protocol[extraction] Protocol[immunoprecipitate] Protocol[labeling] Protocol[hybridization] Protocol[scanning] BioSource BioSourceMaterial SampleMaterial ExtractMaterial ImmunoprecipitateMaterial LabeledExtractMaterial Dye FactorValue[Genotype] BioMaterialCharacteristics[Genotype] BioMaterialCharacteristics[Organism] BioMaterialCharacteristics[StrainOrLine] BioMaterialCharacteristics[Sex] Data1.txt A-EXML-1 244532 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-7 P-EXML-4 P-EXML-5 P-EXML-6 CAD1 whole_organism whole_organism genomic_DNA genomic_DNA genomic_DNA Cy5 CAD1::myc9:TRP1 CAD1::myc9:TRP1 Saccharomyces cerevisiae S288C mating_type_a Data1.txt A-EXML-1 244532 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-4 P-EXML-5 P-EXML-6 CAD1 whole_organism whole_organism genomic_DNA genomic_DNA Cy3 CAD1::myc9:TRP1 CAD1::myc9:TRP1 Saccharomyces cerevisiae S288C mating_type_a Data2.txt A-EXML-1 244533 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-7 P-EXML-4 P-EXML-5 P-EXML-6 RTG3 whole_organism whole_organism genomic_DNA genomic_DNA genomic_DNA Cy5 RTG3::myc18:TRP1 RTG3::myc18:TRP1 Saccharomyces cerevisiae S288C mating_type_a Data2.txt A-EXML-1 244533 P-EXML-1 P-EXML-2 P-EXML-3 P-EXML-4 P-EXML-5 P-EXML-6 RTG3 whole_organism whole_organism genomic_DNA genomic_DNA Cy3 RTG3::myc18:TRP1 RTG3::myc18:TRP1 Saccharomyces cerevisiae S288C mating_type_a